Package index

GraphSpace

GraphSpace-class

GraphSpace: An S4 class for igraph objects

GraphSpace(<ANY>) GraphSpace(<data.frame>)

Create a GraphSpace object

as.GraphSpace()

Convert objects to GraphSpace

getGraphSpace(<GraphSpace>)

Accessors for fetching slots from a GraphSpace object

updateGraphSpace(<GraphSpace>)

Update a GraphSpace object

normalizeGraphSpace(<GraphSpace>)

Normalize node coordinates to graph and image spaces

cropGraphSpace(<GraphSpace>) flipGraphSpace(<GraphSpace>) rotateGraphSpace(<GraphSpace>) transposeGraphSpace(<GraphSpace>)

Crop, rotate, flip, and transpose a GraphSpace

summary(<GraphSpace>)

Summarise a GraphSpace object

Accessors

names(<GraphSpace>) gs_names(<GraphSpace>) gs_nodes(<GraphSpace>) gs_edges(<GraphSpace>) gs_image(<GraphSpace>) `gs_image<-`(<GraphSpace>) gs_image_maxpixels(<GraphSpace>) `gs_image_maxpixels<-`(<GraphSpace>) gs_graph(<GraphSpace>) gs_fdata(<GraphSpace>) `gs_fdata<-`(<GraphSpace>) gs_nfeatures(<GraphSpace>) gs_features(<GraphSpace>) as.igraph(<GraphSpace>) gs_vcount(<GraphSpace>) gs_ecount(<GraphSpace>) gs_scale_factor(<GraphSpace>) `gs_scale_factor<-`(<GraphSpace>) gs_geometry(<GraphSpace>) `gs_geometry<-`(<GraphSpace>) `$`(<GraphSpace>) `$<-`(<GraphSpace>)

Accessors for GraphSpace objects

Graph manipulation

gs_subset_nodes() gs_subset_edges()

Filter nodes and edges in a GraphSpace object

gs_add_nodes(<GraphSpace>) `gs_add_nodes<-`(<GraphSpace>)

Add nodes to a GraphSpace object

gs_add_edges(<GraphSpace>) `gs_add_edges<-`(<GraphSpace>)

Add edges to a GraphSpace object

gs_compute()

Apply igraph functions to the graph inside a GraphSpace

`[`(<GraphSpace>,<ANY>,<ANY>,<ANY>) `[[`(<GraphSpace>)

Subscript operators for GraphSpace objects

gs_vertex_attr(<GraphSpace>) `gs_vertex_attr<-`(<GraphSpace>) gs_edge_attr(<GraphSpace>) `gs_edge_attr<-`(<GraphSpace>)

Attribute utilities for GraphSpace objects

Features

gs_fetch_features() gs_add_features()

Manipulate node features in a GraphSpace object

Geometry manipulation

normalizeGeometry(<GraphSpace>) fitGeometry(<GraphSpace>)

Normalize or fit node geometry

ggplot2 integration

ggplot(<GraphSpace>)

Using ggplot2 with GraphSpace objects

inject_nodespace()

Dynamic Scale Injection for Edge Clipping

Geoms

geom_nodespace() nodespace_handler()

Draw node elements in a 2D graph layout

geom_edgespace() edgespace_handler()

Draw edge elements in a 2D graph layout

geom_graphspace()

Convenience wrapper for node and edge geoms

Annotation

annotation_gspace_image()

Annotate a GraphSpace Plot with an Image

Plotting

plotGraphSpace(<GraphSpace>) plotGraphSpace(<igraph>) plotGraphSpace(<tbl_graph>) plotGraphSpace(<gs_graph>)

Wrapper function to plot GraphSpace objects in ggplot2

plot(<GraphSpace>)

Plot GraphSpace objects

Themes

theme_gspace_th0() theme_gspace_th1() theme_gspace_th2() theme_gspace_th3() theme_gspace_coords() theme_gspace_legend()

RGraphSpace ggplot2 themes

Utilities

as_colorraster()

Map numeric values to a color raster

sfshape_star() sfshape_stars()

Build star polygons

sfshape_ngon() sfshape_ngons()

Build regular polygons

Data

gtoy1 gtoy2

Toy 'igraph' objects

gs_image_toy

Toy 'GraphSpace' object

Internal

GeomEdgeSpace

GeomEdgeSpace: a ggplot2 prototype for GraphSpace-class methods

GeomNodeSpace

GeomNodeSpace: a ggplot2 prototype for GraphSpace-class methods

StatEdgeSpace

Attribute Processing for GeomEdgeSpace

StatNodeSpace

Attribute Processing for GeomNodeSpace

Package

RGraphSpace RGraphSpace-package

RGraphSpace: Rendering Graphs as Coherent Spatial Objects in 'ggplot2'