To install RGraphSpace, R version 4.5 or greater is required.
Release version
# Release version from CRAN
install.packages("RGraphSpace")Development version
# Dependencies to build the vignettes
install.packages("knitr")
install.packages("rmarkdown")
install.packages("remotes")
# Package source
remotes::install_github("sysbiolab/RGraphSpace", build_vignettes=TRUE)Other packages used in the tutorials
# Used in the introductory vignettes
install.packages("ggnewscale")
install.packages("patchwork")
# Used in the general-purpose vignettes
install.packages("ggraph")
install.packages("dplyr")
install.packages("sf")
install.packages("geometry")
install.packages("maps")
install.packages("flightsbr")
install.packages("airportr")
install.packages("BiocManager")
BiocManager::install("RedeR")
# Used in the advanced vignettes
install.packages("sf")
install.packages("terra")
install.packages("Seurat")
BiocManager::install("glmGamPoi")
BiocManager::install("SpatialExperiment")
BiocManager::install("SpatialFeatureExperiment")
BiocManager::install("VisiumIO")
BiocManager::install("OSTA.data")
remotes::install_github("satijalab/seurat-data")