Getting started with PathwaySpace
Sysbiolab Team
2025-10-25
Package: PathwaySpace 1.0.3.1
Introductory vignettes
These tutorials introduce PathwaySpace using simple toy examples: Network Signal Projections walks through the main PathwaySpace projection methods; Signal Decay Functions describes how to set up decay functions to model specific network nodes; and Signal Aggregation Rules demonstrates how to create signal aggregation functions to emphasize patterns in the data.
Visualizing features in PathwaySpace
These tutorials showcase PathwaySpace applied to real-world scenarios, highlighting complex feature patterns. The Sparse Feature Sets vignette demonstrates how to analyze feature signals when only a limited number of nodes carry relevant information, while the Spatial Transcriptomics vignette illustrates how to project gene expression signals across tissue sections.
