Accessors for Fetching Slots from a PathwaySpace Object

getPathwaySpace retrives information from individual slots available in a PathwaySpace object.

Usage

# S4 method for class 'PathwaySpace'
getPathwaySpace(ps, what = "status")

Arguments

ps

A preprocessed PathwaySpace class object

what

A character value specifying which information should be retrieved from the slots. Options: "nodes", "edges", "graph", "image", "pars", "misc", "signal","projections", "status", "silhouette", "summits", "summit_mask", "summit_contour"

Value

Content from slots in the PathwaySpace object.

Examples

# Load a demo igraph
data('gtoy1', package = 'RGraphSpace')

# Create a new PathwaySpace object
ps <- buildPathwaySpace(gtoy1, nrc = 100)
#> Validating arguments...
#> Validating the 'igraph' object...
#> Normalizing node coordinates to graph space...
#> Creating a 'PathwaySpace' object...
# note: adjust 'nrc' to increase image resolution

# Get the 'status' slot in ps
status <- getPathwaySpace(ps, what = 'status')